Stanford Synchrotron Radiation Laboratory

The Stanford Synchrotron Radiation Laboratory (SSRL), one of four DOE-supported national synchrotron radiation sources and a division of SLAC, is located on the SLAC site. SSRL annually attracts over 1300 experimenters from around the world. Graduate students and researchers from Stanford and other universities, industry, and government laboratories use electromagnetic radiation, known as synchrotron radiation, to study the structural and electronic properties of gases, liquids, and solids. These studies are conducted in a variety of scientific contexts ranging from the basic physics of
materials, to the molecular structures of proteins and viruses, to spectroscopic studies of pollutant elements like lead and plutonium in complex environmental materials. The radiation produced by electrons in the 3 GeV SPEAR storage ring is continuous from below the visible to the hard x-ray region and is 5 to 6 orders of magnitude more intense than that produced by a conventional sealed-tube x-ray generator. With energies matched to the binding energies of electrons and wavelengths matched to the distances between atoms, synchrotron radiation is a powerful and unique tool for measuring both the electronic and atomic structures of materials.

Students are involved in all phases of research at SSRL, as well as in the development of instrumentation, with over 350 Ph.D. theses completed from more than 30 universities. Graduate students from over 80 universities are currently involved in research at SSRL. About 20 Stanford faculty and 85 Stanford graduate students are presently using SSRL to study a wide variety of problems.
 

Physics of Materials

Electronic Structure of Materials: Photoemission and X-ray Absorption Spectroscopy. Photoemission and x-ray absorption are very powerful and direct probes of the electronic structure of a material, and are widely used at SSRL for fundamental and technological studies of semiconductors, superconductors, magnetic materials, fullerenes, metallic clusters, etc. Because these studies are conducted in the 10–3000 eV energy range, they are in general rather surface sensitive (5–1000 Å) and are performed in ultra-high vacuum systems. In photoemission spectroscopy, an incident photon of energy 10–1500 eV ejects an electron from one of the occupied electronic states of a material. This “photoelectron” is collected and its energy analyzed. The energy distribution of the photoelectrons can then be mapped back to determine the density of occupied states of the material. This information can then be used to study both the valence band electronic structure as well as chemical bonds in a material.

The complementary technique of x-ray absorption spectroscopy is used to probe the conduction band states of materials as well as to determine surface atomic structures. If the conduction band states are exchange split due to magnetism, then the absorption coefficient of circularly polarized light is dependent upon the spin of the conduction electrons. Such an experiment is called Magnetic Circular Dichroism (MCD) and is very powerful for determining magnetic information at the atomic scale. MCD measurements on materials that may be used in magnetic storage devices in future generations of computers is currently one important area of research at SSRL.

Examples of research in the physics of materials in which graduate students may participate include the following:
• Measurements performed at SSRL have provided key information about the symmetry of the superconducting order parameter. Experimenters are able to measure the superconducting energy gap as a function of crystal momentum. It was found that, unlike conventional superconductors, the gap in the high-temperature superconductors is very anisotropic. The specific form of the anisotropy of the gap measured is suggestive of d-symmetry superconductivity.
• The coupling of magnetism across non-magnetic spacer layers enables the engineering of advanced magnetic storage media. The origin and nature of this coupling is not understood. By studying the Cu and Co edges individually with circularly polarized radiation, researchers at SSRL are able to determine that the Cu atoms in the multi-layers obtained a small magnetic moment, in contrast to the situation in pure Cu metal.
• In the area of chemical sciences, researchers have made use of valence band photoemission and chemical shift scanned energy photoelectron diffraction to identify molecular species and the structure of the surface bond for self-assembled alkyl layers on silicon surfaces, which may ultimately be used as chemical receptors in sensor applications.

Structural Studies of Materials. X-rays can also be used to study long- and short-range order in solids, liquids, and gases. Scattering, such as diffraction, can be used to determine the structure of thin films on surfaces, to explore nuclear magnetic structure, and to determine the structure of newly discovered compounds such as high-temperature superconductors. X-ray absorption spectroscopy (XAS) is useful for determining the near-neighbor environment of an atomic species where no long-range order exists. Researchers use diffraction at SSRL because of the vastly greater intensity and lower divergence of the synchrotron beam relative to a laboratory x-ray source. In addition, this synchrotron source has sufficient intensity over a wide photon energy range (10–30,000 eV) to make feasible new types of scattering studies, including anomalous x-ray scattering and anomalous small-angle x-ray scattering, which provide unique information on the local atomic arrangements around individual elements (x-ray scattering) and on nanoscale domains (small-angle x-ray scattering) in amorphous materials.

Examples of research in structural studies of materials include the following:
• X-ray tomography is being used at SSRL to study internal bone structure and how it changes with advancing osteoporosis. The results are clinically relevant for quantitative evaluation of the effects of different therapies.
• Time-resolved, in situ, grazing-incidence x-ray scatter-ing is being used to study the growth of epitaxial GaAs by chemical vapor deposition. Because these films are grown in high-temperature, near-atmospheric pressure conditions, electron-based probes are ineffective. Optical probes can measure electronic structure, but only x-rays can measure atomic long-range order. X-ray scattering is used to determine growth rates in situ and to map out regions where layer-by-layer growth occurs and the crossover to step-flow and three-dimensional growth.
• The extra brightness of the synchrotron means that diffraction from resonant nuclei is possible. The resulting diffracted beam has the energy resolution of a Mössbauer transition, that is,?E/E of 10 –8 , and has the potential of being a powerful new probe of matter.
• Molybdenum-germanium alloys, depending on the ratio of the constituents, can show insulating, metallic, and superconducting behavior. Small-angle x-ray scattering has been used to observe the presence of phase separation in these films in the composition region around the metal-insulator transition. Using the tunability of the synchrotron source, the chemical species of the two separated regions have been identified, which helps to explain the observed electrical properties.

Powder Diffraction Studies of Materials. In 1997 SSRL commissioned a new experimental station with dedicated instrumentation for x-ray powder diffraction. Powder diffraction is one of the most widely used materials characterization methods. Over the last 50 years it has been routinely used for crystalline phase “finger-printing.” Recently, cheap and powerful computers and dedicated second- and third-generation x-ray synchrotron sources have transformed powder diffraction into a very powerful structural tool. Powder diffractometry projects the three-dimensional reciprocal lattice into one-dimensional space. Such projection causes (partial) overlap of peaks with similar lattice spacing. The peak overlap loses structural information and sometimes makes the task of structure solution difficult. Nevertheless, the partial peak overlap is very useful in investigations of subtle symmetry breaks which are often missed in routine single crystal measurements. Further, the compaction of the entire reciprocal lattice into one dimension accelerates data collection. With a bright radiation source and appropriate detector, many structural changes can be investigated in real time. Because of the tunability of synchrotron x-rays over a wide energy range, one can now conduct x-ray scattering in the vicinity of an absorption edge where it is modified by resonance processes. Such resonance effects can be utilized in deciphering complex structures. Also, at resonance conditions some of the magnetic scattering cross-sections are significantly enhanced, allowing magnetic structural investigations using x-ray scattering. The SSRL powder diffractometer can be tuned between 4 and 10.5 keV, covering many transition-metal absorption edges. Research utilizing this new SSRL resource is just getting underway.

Impurities on the Surfaces of Semiconductor Materials. SSRL is the world leader in the application of synchrotron radia-tion to total external reflection x-ray fluorescence (TXRF) for the measurement of ultra-low levels of metal contamination on silicon wafer surfaces. Ultra-clean silicon wafer surfaces are critical to the fabrication of ULSI circuits for microprocessors and memory. As a result, integrated circuit manufacturers expend significant resources to develop wafer-cleaning processes to make possible the next generations of circuits with smaller and smaller feature sizes. In order to develop advanced cleaning processes to remove a wide variety of metals from silicon wafer surfaces, the semiconductor industry has long realized that equally powerful metrology tools are needed to quantify the quality of the cleaning processes. Currently, the semiconductor industry uses in-house TXRF systems employing rotating anode x-ray sources or chemical methods, which involve removing the impurities from the wafer surface and measuring them separately. While these conventional methods continue to improve, the state-of-the-art cleaning capability is often better than these methods are capable of measuring. As a result, in collaboration with Hewlett-Packard and Intel, SSRL began a program to evaluate the use of synchrotron radiation TXRF (SR-TXRF) for the detection of transition metal impurities and aluminum on silicon wafers several years ago. This work has shown that the detection limits of TXRF could be improved by more than an order of magnitude, resulting in a detection limit of 3 × 10 8 atoms/cm 2 for Ni, compared to that of the best conventional systems of 6 × 10 9 atoms/cm 2 . This project has also included efforts to understand the processes that limit the sensitivity of SR-TXRF as well as developing techniques for high-sensitivity detection of light elements.

Given this success, Sematech placed synchrotron radiation metrology on its “roadmap” of critical metrology technologies and is sponsoring a trial to evaluate the applicability of SR-TXRF to industrial applications within the semiconductor industry. This trial has involved the extensive participation of scientists from the Sematech member companies to evaluate and use SR-TXRF. The industrial participation has allowed SSRL to benchmark the technique for a wide variety of semiconductor process wafers, as well as to obtain feedback on the practical aspects of the method. Companies involved in this study include AMD, Applied Materials, Balazs Labs, DEC, Hewlett-Packard, IBM, Intel, Kevex, Lucent, Motorola, National
Semiconductor, and Texas Instruments.

The Sematech trial has offered the opportunity to perform a number of real industrial applications. This interest by the Sematech member and related companies has been heightened by both improvements in the technique and hardware upgrades made possible by two cooperative research and development agreements between Hewlett-Packard and SSRL. These improvements, including contamination-free wafer handling and wafer mapping, have made possible industrially relevant applications. The work during the past year has included: comparison of SR-TXRF with other techniques, including VPD-ICPMS (vapor phase decomposition-inductively coupled plasma mass spectrometry) and HIBS (heavy-ion backscattering); evaluation
of manufacturing process lines at several companies; evaluation of new and repaired process equipment; evaluation of as-received wafers (vendor qualification); evaluation of chemical bath life; evaluation of new cleaning chemistry, including more dilute baths (for reduction of chemical usage); cross-contamination evaluation of process steps with new process materials (such as polymer coatings); and characterization of ion-implanted materials.

These data have demonstrated to industry that synchrotron radiation brings TXRF sensitivities into a regime which can impact ULSI process development. We are now at a point where the focus of the work can turn toward application of the technique. At this time, the needs of the semiconductor industry regarding the SR-TXRF capabilities are being evaluated through the continued participation of the scientists from the Sematech member companies. One of the goals of this evaluation process is to develop an understanding of the practical issues of accessibility, throughput, and cost, which may ultimately determine the long-term impact of SR-TXRF on semiconductor research and development. In addition, SSRL is exploring the options for a dedicated service provider who might efficiently perform the measurements. Finally, future technical advances are being explored, including new detectors and undulator beam lines on the proposed SPEAR3, which could further improve throughput and sensitivities (by an order of magnitude). Work at SSRL continues to attract considerable interest from a wide international audience including new industrial users as well as visitors from other synchrotron facilities interested in setting up an SR-TXRF capability at their facility. It seems likely that this interest will continue into the future.

Structural Molecular Biology

The goal of understanding life has evolved into a large interdisciplinary effort that integrates information extending from experimental studies at the atomic and molecular levels to studies of organelle, cellular, and tissue organization and function. There is strong interplay among scientific fields including chemistry, structural biology, biochemistry, genomics, bioinformatics and the computational sciences. Atomic-level information can provide an
understanding of biological function and malfunction that leads to disease. Structural Molecular Biology (SMB) provides the vast majority of information on an atomic level and will play an even greater role in this regard in the future. The unique properties of synchrotron radiation (tunability of the energy, high intensity, and high degree of collimation) make it a powerful source of x-ray radiation for biological structural studies.

SSRL has a strong program in SMB with a focus on cutting edge research in science and technology, and providing world-class facilities to
Stanford faculty and students as well as to a large community of outside research groups.

The techniques developed and used at SSRL include protein crystallography (PX), x-ray absorption spectroscopy (XAS), and small-angle x-ray scattering/diffraction (SAXS/D). These techniques provide the basis for an integrated approach to studying the structure and function of biological macromolecules to unravel life processes. Protein crystallography uses x-ray dif-fraction from single crystals to determine the three dimensional, atomic-level structures of macromolecules. Scientific developments are focused on the multiple wavelength anomalous dispersion (MAD) method for structure determination and very high-resolution structures for atomic detail. X-ray absorption spectroscopy (XAS) can be divided into two regions: the edge spectrum, and the extended x-ray absorption fine structure (EXAFS). XAS edge studies provide the means to determine electronic structure of atoms in biological molecules, including properties such as oxidation state, spin state, and covalency for specific atomic sites. EXAFS, on the other hand, provides a tool for determining local radial structure, and can yield particularly accurate bond lengths. XAS thus provides an important means to probe the active sites of metallo-proteins. SAXS/D is used to study proteins and larger molecular assemblies in non-crystalline
forms such as solutions or fibers, and provides structural insights at the molecular level, thus bridging the knowledge
gap between the atomic scale of individual molecules and more complex systems. Time-resolved studies are routinely per-formed
to investigate proteins in action. Small-angle single crystal diffraction provides a means of solving the phase prob-lem
for high-symmetry crystals of large molecular assemblies, such as virus particles, when used in combination with high-resolution
diffraction.

Examples of research in structural and molecular biology in which graduate students may participate include the following:
• Structure and function of biological macromolecules with focus on ultra-high resolution and MAD tech-niques in protein crystallography. State-of-the-art facilities allow for leading-edge research to be performed where details of enzymatic processes can be studied.
• Technological developments in the data collection facilities, instrumentation, and software crucial for studying very large bio-molecular assemblies and very small, weakly diffracting crystals. These “next generation” experiments will begin to unravel complex processes such as viral activation.
• New theoretical approaches to the analysis of multiple-scattering EXAFS have recently expanded the traditional role of EXAFS to include bond-angle determination in some special cases, including metal ligands such as -CO, -CN, and -NO.
• Time-resolved x-ray scattering studies on viral assembly and protein folding; biophysical studies on proteins of clinical importance; methodological developments for single-crystal diffraction technique and time-resolved studies.
 

Molecular Environmental Science

Molecular Environmental Science (MES) describes the multidisciplinary fields of research concerned with elucidating the molecular-scale speciation and chemical processes affecting environmental pollutants in earth materials and anthropogenic materials, and their interactions with the hydrosphere and biosphere. Synchrotron-based techniques, particularly x-ray absorption spectroscopy (XAS), have become essential tools in MES because of their unique capabilities for analyzing environmental materials. XAS provides quantitative chemical and structural information (e.g., oxidation state, local coordination environment, molecular structure, physical form, and host-phase identity) for pollutant metal ions and organic molecules in complex natural materials and material assemblages, including amorphous, poorly crystalline, and/or microcrystalline materials, adsorbates on solids, and aqueous species. XAS measurements are being used to determine the speciation of toxic and radioactive metals in soils, groundwaters, and man-made waste
forms. The transformations of these species to more or less toxic forms and the rates of these reactions are also being studied using XAS. No other spectroscopic technique provides this combination of structural and chemical information. Other synchrotron-based methods at SSRL, including x-ray scattering, x-ray standing wave measurements, and photoemission spec-troscopy, provide information about the geometric and electronic structures of solid surfaces, the changes in electronic and geometric structures of these surfaces after reactions with small molecules such as H2O, and the distribution of ions in solutions in contact with solid surfaces. One of the most chal-lenging areas of MES research involves probing the structure and composition of the solid-water interfacial region, where some of the most important environmental reactions occur. This can be done using a combination of grazing-incidence XAS and x-ray standing wave measurements. The molecular and atomic-scale knowledge gained from these MES studies is
critical for the development and optimization of safe and cost-effective contaminant remediation and disposal technologies, understanding contaminant transport in contaminated water supplies, and predicting present and future risks to vulnerable populations. Synchrotron-based MES was pioneered at SSRL in the late 1980s/early 1990s. Since then, the amount of beam time provided for MES research has grown 40-fold.

Examples of research in molecular environmental science in which graduate students may participate include the following:
• Speciation of arsenic and lead in mine wastes and sediments. The chemical and physical forms of these metal ion contaminants in mine wastes from Leadville, Colorado (lead), and Trona, Jackson, and Marysville in California (arsenic) were determined using XAS in  combination with electron microscopy techniques. Arsenic was found to be present as As(0) and As(V), both in precipitates and adsorbed on mineral surfaces.
The more toxic and mobile As(III) species was not detected. Lead was found to be predominantly Pb(II), up to 50% of which was adsorbed on mineral surfaces. Since these species are sources and sinks for arsenic and lead, this information is requisite for predicting arsenic and lead transport in groundwater over time and developing strategies to remediate the contamina-tion. Photocatalyzed oxidation of As(III) to As(V) on TiO2 particles in clay minerals is also being studied with XAS and is found to be a very rapid process that can naturally transform arsenic from the more toxic to the less toxic form.
• Speciation and oxidation state of selenium in soils at Kesterson National Wildlife Refuge. Soils from this California Central Valley wildlife refuge are being studied  by a collaboration of scientists and graduate students from Stanford University and Lawrence Berkeley National Laboratory. The oxidation state of Se affects its mobility in natural waters and thus controls its dispersal in the environment. Synchrotron-based XAS studies of the contaminated soils provided the first direct evidence of elemental Se in soils. In addition, laboratory-based XAS studies have shown that aqueous Se can be reduced from the highly toxic and soluble Se(VI) form to the relatively non-toxic and insoluble Se(O) form by interaction with natural Fe(II)-containing solids.
• Fundamental structures and compositions of oxide surfaces and water at oxide surfaces. A combination of single-crystal grazing-incidence XAS, x-ray standing wave, and photoemission spectroscopy measurements are being used to characterize the fundamental physical and chemical aspects of solid-water interfaces, including metal-ion adsorption reactions and the distribution of ions in the electrical double layer. Knowledge of the fundamental reactions that occur at solid-water interfaces would enhance a host of more applied MES research efforts, ultimately leading to more efficiently parameterized, generalizable, and hence more accurate predictive models of solute-oxide interactions.
• Adsorption of uranium and co-contaminants on oxides. XAS is being used in combination with Fourier Transform Infrared (FTIR) spectroscopy and macro-scopic solution measurements to study the molecular structures and compositions of uranium (VI) – co-contaminant reaction products on oxide minerals. Ternary interactions between these species are common in contaminated groundwaters and play major roles in the fate and transport of uranium and co-contaminants (e.g., EDTA, NTA, citrate, phosphate, and carbonate) in aquifers and the vadose zone. Knowledge of the adsorbate species is necessary in order to predict their mobility in affected groundwaters, assess the risk posed to humans and wildlife, and remediate the contamination.
 

Polymer Science

Soft-materials research conducted at SSRL has focused on the structure and processing of polymers. The main synchrotron method used in these studies is small-angle x-ray scattering (SAXS). A key element in the ability to study the processability of polymer blends, composites, and block copolymers is the use of a temperature-controlled chamber where materials can be heated or cooled at prescribed rates. This capability has been used to investigate the phase transitions occurring in polymer blends, polymerizing copolymers, and ionic block copolymers. The phase transitions observed at the macromolecular length scale through time-resolved SAXS significantly influence the material rheology and, consequently, its behavior in processing. Of particular technical interest is the ability, by using SAXS,to follow the bulk polymerization of a microphase separating copolyurethane with a small reaction injection-molding machine to meter, mix, and inject reactants into a thermostated cell at an appropriate beam line at SSRL.

The melting transition in rigid-rod polymers is critical to the production of ultra-high strength materials such as Kevlar, used in bullet-proof vests. This transition, along with related processes in ionomeric membranes, have been focuses of recent studies at SSRL.

Another important polymer processing issue involves the removal of solvent from polymeric materials. Researchers at SSRL have recently examined the shape transitions occurring in  highly concentrated block copolymer solutions as solvent is removed. An important feature in these studies is the use of a new two-dimensional CCD array detector that allows fine resolution of anisotropic structures developing in the material.
 

Accelerator Physics

Graduate Student Training in Accelerator Physics.

Traditionally, the accelerator physics graduate student program is carried out jointly with the Applied Physics Department of Stanford University through joint faculty appointments. The gradu-ate student program in accelerator physics concentrates on the production of coherent and incoherent electromagnetic radiation in various forms, including synchrotron radiation and transition radiation from particle accelerators.

The SUNSHINE facility, located on the Stanford campus, is a student-operated 30 MeV linear accelerator where research is aimed at producing and utilizing femto-second electron bunches. Such short bunches emit coherent radiation at wavelength equal and longer than the bunch length. Radiation is generated in form of transition-, stimulated transition- and undulator-radiation. The photon brightness achieved so far is 4 to 8 orders of magnitude higher than conventional sources in the far infrared at wavenumbers of up to 100 cm -1 . During their research program, students engage in theoretical and computer simulation studies as well as hands-on experience in the development, operation, and optimization of particle accelerators.
 

The LCLS Project.

Accelerator scientists from SLAC, in collaboration with scientists from LBNL, UCLA, LANL, and LLNL, are developing a plan for using the SLAC linac to drive a linac coherent light source—an x-ray laser operating at wavelengths down to the Å range. While the LCLS operates on the principle of the free-electron laser, a single-pass approach with no optical cavity will be used. This makes it possible to reach shorter wavelengths than would be possible with a conventional free-electron laser.
 

The LCLS offers significantly higher brightness, coherence, and peak power than any other existing or planned x-ray source. With present technology, an LCLS could be built to operate at wavelengths down to about 20 Å. With improvements to technical components, it should be possible to extend this to wavelengths as short as a few Å. The high coherence and ultra-short pulse capabilities of the LCLS would allow fundamentally new types of research to be carried out in chemistry, materials science, and structural biology. Time-resolved studies of crystal lattice motions and fast chemical reactions would be possible. Enough coherent photons would be available to study nonlinear optical properties of materials. Opportunities exist for graduate students to join research and development efforts on the various technical components of this project (rf photocathode guns, bunch length compressors, precision long undulators, simulation studies, beam line optics, experimental stations), as well as on the applications of this unique source.
 
 
 

SLAC